PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma64g00560.1
Common NameZOSMA_64G00560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 159aa    MW: 17761.9 Da    PI: 8.2372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma64g00560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-105696954
                     HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      r RR+ri ++f  L++l+P  +      K++ +++Le+A++Y+k L
  Zosma64g00560.1 56 ARERRHRISDRFKILQSLVPGgN------KMDTVSMLEEAIHYVKFL 96
                     699*****************955......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1424796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1452105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1253100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-1353100No hitNo description
SMARTSM003534.8E-1253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-75696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGMEAGGGPQ RQSYPWFQQE ELPSYVGREG NRMRNGRRGS GGGGTKLSTD PQSVAARERR  60
HRISDRFKIL QSLVPGGNKM DTVSMLEEAI HYVKFLKTQI WLHHAIMGNI NPSPSTSYPP  120
PSFSLPPPQL PPYDNHSLPP FPDQCCQWSF QSEDDGFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264777.17e-39PREDICTED: transcription factor bHLH140-like
RefseqXP_011019235.11e-38PREDICTED: transcription factor bHLH140-like
SwissprotQ9M0415e-30BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A0K9NSS71e-116A0A0K9NSS7_Z
STRINGPOPTR_0006s10350.11e-37(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-29APRATAXIN-like